InstallationΒΆ

We distribute ssHMM both as a Python package and as a Docker image (similar to a virtual machine). There are three ways to install ssHMM:

Conda installation:

  • quick and easy installation
  • requires Conda
  • recommended for most users

Docker installation:

  • quick and easy installation
  • requires Docker
  • requires sudo rights
  • all dependencies of ssHMM are pre-installed in the image
  • recommended for Linux beginners

Manual installation:

  • more difficult installation
  • dependencies of ssHMM have to be installed manually
  • recommended only for experienced users